PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G186500.2
Common NameB456_012G186500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 224aa    MW: 25000.1 Da    PI: 6.3923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G186500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-093272348
                        -HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                        +W++Ia +++ +Rt++++k++w+++l
  Gorai.012G186500.2  3 RWSAIATHLP-KRTDNEIKNYWNTHL 27
                        4*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.951131IPR017930Myb domain
CDDcd001672.16E-7327No hitNo description
SuperFamilySSF466896.01E-8336IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-13338IPR009057Homeodomain-like
PfamPF002493.7E-7327IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MYRWSAIATH LPKRTDNEIK NYWNTHLKKR LTKMGIDPVT HKPKTNALGS TTGNPKDAAN  60
LSHMAQWESA RLEAEARLVR ESKLVPSNPP QSNHFTAVAP SPTPATRPQC LDVLKAWQGV  120
VCGLFTLNMD NNNLQSPTST LNFMENTTTL PMSSSSVNGM FNENFGWNSS FNPCESGDIL  180
KVEYGSDQIP ELKERLDHPM ELHEMDCSSE GTWFQELFGF NGL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362830.0AF336283.1 Gossypium hirsutum GHMYB25 (ghmyb25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458871.11e-164PREDICTED: transcription factor MYB34-like
TrEMBLA0A0D2S5401e-168A0A0D2S540_G
STRINGPOPTR_0008s08920.12e-65(Populus trichocarpa)
STRINGPOPTR_0010s17300.12e-65(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-45myb domain protein 106
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]